Stefan Hellander


Uppsala University

S. Hellander, A. Hellander, and L. Petzold. Mesoscopic-microscopic spatial stochastic simulation with automatic system partitioning.  J. Chem. Phys.  146(6),  2017.
M. Golkaram, J. Jang, S. Hellander, K. S. Kosik, and L. R. Petzold. The Role of Chromatin Density in Cell Population Heterogeneity during Stem Cell Differentiation.  Scientific Reports  7(1),  2017.
S. Hellander and L. Petzold. Reaction rates for stochastic reaction-diffusion processes on unstructured meshes.  J. Chem. Phys.  146(6):064101,  2017.
B. Drawert, S. Hellander, M. Trogdon, and L. Petzold. Stochastic simulation of 3D moving and deforming domains using the reaction-diffusion master equation.  J. Chem. Phys  145(18):184113,  2016.
B. Drawert et al. Stochastic Simulation Service: Bridging the gap between the computational expert and the biologist.  PLOS Comput. Biol.  12(12):e1005220,  2016.
M. Golkaram, S. Hellander, B. Drawert, and L. Petzold. Macromolecular crowding regulates the gene expression profile by limiting diffusion.  PLOS Comput. Biol.  12(11):e1005122,  2016.
S. Hellander and L. Petzold. Reaction rates for a generalized reaction-diffusion master equation.  Phys. Rev. E  93(1):013307,  2016.
M. B. Flegg, S. Hellander, and R. Erban. Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations.  J. Comput. Phys.  289:1–17,  2015.
S. Hellander, A. Hellander, and L. Petzold. Reaction rates for mesoscopic reaction-diffusion kinetics.  Phys. Rev. E  91(2):023312,  2015.
S. Wang, J. Elf, S. Hellander, and P. Lötstedt. Stochastic reaction-diffusion processes with embedded lower dimensional structures.  Bull. Math. Biol.  76(4):819–853,  2013.
H. Bani-Hashemian, S. Hellander, and P. Lötstedt. Efficient sampling in event-driven algorithms for reaction-diffusion processes.  Commun. Comput. Phys.  13(4):958–984,  2013.
S. Hellander. Single molecule simulations in complex geometries with embedded dynamic one-dimensional structures.  J. Chem. Phys.  130(1):014103,  2013.
A. Hellander, S. Hellander, and P. Lötstedt. Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions.  Multiscale Model. Simul.  10(2):585–611,  2012.
S. Hellander, A. Hellander, and L. Petzold. Reaction-diffusion master equation in the microscopic limit.  Phys. Rev. E.  85(4):042901,  2012.
S. Hellander and P. Lötstedt. Flexible single molecule simulation of reaction-diffusion processes.  J. Comput. Phys.  230(10):3948–3965,  2011.